Disease: Tuberculosis
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs1128503
ABCB1
0.564 0.760 7 87550285 synonymous variant A/G snv 0.54 0.63 64
rs4804803
CD209
0.732 0.360 19 7747847 upstream gene variant A/G snv 0.26 15
rs4073
CXCL8
0.566 0.800 4 73740307 upstream gene variant A/T snv 0.46 64
rs7041
GC
0.576 0.800 4 71752617 missense variant A/C;T snv 0.52; 4.0E-06 64
rs4588
GC
0.597 0.720 4 71752606 missense variant G/A;T snv 1.6E-05; 0.25 53
rs2430561
IFNG ; IFNG-AS1
0.590 0.760 12 68158742 intron variant T/A snv 0.36 50
rs9939609
FTO
0.559 0.720 16 53786615 intron variant T/A snv 0.41 98
rs7096206
MBL2
0.708 0.480 10 52771925 upstream gene variant G/A;C;T snv 17
rs10735810
VDR
0.662 0.640 12 47879112 start lost A/C;G;T snv 26
rs2228570
VDR
0.521 0.760 12 47879112 start lost A/C;G;T snv 0.63 99
rs1544410
VDR
0.542 0.760 12 47846052 intron variant C/A;G;T snv 78
rs1799864
CCR2
0.572 0.680 3 46357717 missense variant G/A snv 0.13 0.12 68
rs7453920
HLA-DQB2
0.752 0.440 6 32762235 intron variant A/G;T snv 10
rs1800629
TNF
0.472 0.920 6 31575254 upstream gene variant G/A snv 0.12 0.14 169
rs1799724
LTA ; TNF
0.600 0.680 6 31574705 upstream gene variant C/T snv 8.5E-02 47
rs153109
IL27
0.623 0.600 16 28507775 intron variant T/C snv 0.43 37
rs1800796
IL6-AS1 ; STEAP1B ; IL6
0.555 0.760 7 22726627 non coding transcript exon variant G/C snv 9.9E-02 74
rs1800896
IL19 ; IL10
0.507 0.800 1 206773552 intron variant T/C snv 0.41 113
rs1800871
IL19 ; IL10
0.508 0.800 1 206773289 5 prime UTR variant A/G snv 0.69 108
rs1800872
IL19 ; IL10
0.495 0.840 1 206773062 5 prime UTR variant T/G snv 0.69 119
rs5743708
TLR2
0.525 0.800 4 153705165 missense variant G/A snv 1.7E-02 1.8E-02 98
rs5743704
TLR2
0.763 0.240 4 153704799 missense variant C/A snv 2.8E-02 2.8E-02 9
rs10766197
CYP2R1
0.807 0.240 11 14900334 upstream gene variant G/A;C snv 6
rs763059810
CXCR4
0.623 0.600 2 136115750 missense variant T/C snv 4.0E-06 41
rs3764880
TLR8-AS1 ; TLR8
0.752 0.320 X 12906707 start lost A/G snv 0.31 0.30 11